- MGL-The Molecular Graphics Laboratory
- MGLTools website
- Cinema4D
- Maya
- Blender
- Molecularmovie.org
- LifeExplorer
- Molecular Maya Toolkit
- BioBlender
- Scivis-Scientific Visualization Unit
- GrahamJ Medical Media
- Protein Movie Generator v2
- Modeller
- PyRosetta
- FoldIT